PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28295
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 349aa    MW: 39116.8 Da    PI: 6.84
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28295genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.26.4e-53161441129
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100
               lp+GfrFhPtd e++++yL +kv +k++++  vi+evd++k+ePwdLp++v+ +ek+ yfFsk+d ky+tg r+nrat++gyWkatgkdke+++  + +lv
  EMT28295  16 LPAGFRFHPTDVEIITFYLVHKVLKKPFDV-IVIEEVDLNKCEPWDLPNNVNMGEKDQYFFSKKDLKYPTGVRTNRATNAGYWKATGKDKEIVHPpTMSLV 115
               799***************************.99***************99999*****************************************978889* PP

       NAM 101 glkktLvfykgrapkgektdWvmheyrle 129
               g+kktLvfykgrap+gekt+W+mheyrle
  EMT28295 116 GMKKTLVFYKGRAPRGEKTNWIMHEYRLE 144
               ***************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-578179IPR003441NAC domain
PROSITE profilePS5100554.52516179IPR003441NAC domain
PfamPF023655.4E-2617143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAAHLHVQHQ QQHLNLPAGF RFHPTDVEII TFYLVHKVLK KPFDVIVIEE VDLNKCEPWD  60
LPNNVNMGEK DQYFFSKKDL KYPTGVRTNR ATNAGYWKAT GKDKEIVHPP TMSLVGMKKT  120
LVFYKGRAPR GEKTNWIMHE YRLEMGKQHT PDLPTDIVRA ASINATSKEE YVVCRIFHKS  180
TGLKKVVMPS YSMPIPMSMG EEQQQGFLES NTLAPLMDYD VPSSLAPLPP LPAASLYQMH  240
NFGAGASMMG SAVLPMMNNQ YFENHHHQMM VAPPQSSMSF YNNQQQQMMH MSAELDFMVG  300
VDPGSGTSSI VSHEDVLTGT SNNIQGNAGA TISGEISSVN MGMDGMWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B2e-4721851171NAC domain-containing protein 19
4dul_A2e-4721851171NAC domain-containing protein 19
1ut7_B2e-4721851171NO APICAL MERISTEM PROTEIN
1ut7_A2e-4721851171NO APICAL MERISTEM PROTEIN
1ut4_B2e-4721851171NO APICAL MERISTEM PROTEIN
1ut4_A2e-4721851171NO APICAL MERISTEM PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0275750.0HM027575.2 Triticum aestivum NAC transcription factor NAM (NAM) mRNA, complete cds.
GenBankKT7611890.0KT761189.1 Triticum aestivum NAM like-protein transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9FLJ21e-69NC100_ARATH; NAC domain-containing protein 100
TrEMBLM8BTH30.0M8BTH3_AEGTA; Protein CUP-SHAPED COTYLEDON 2
STRINGMLOC_5374.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.17e-71NAC domain containing protein 58